Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
---|---|---|---|---|---|---|---|---|---|
THYM | rs35994619 | chr8:82679018 | TA/T | 7.04E-5 | 112 | 42.25 | 36.4 | 22.5 | KM Plot |
THYM | rs36023932 | chr8:82690349 | C/A | 7.04E-5 | 112 | 42.25 | 36.4 | 22.5 | KM Plot |
THYM | rs36051085 | chr2:32977704 | C/G | 1.06E-12 | 112 | 49.5 | 26.2 | 0.9 | KM Plot |
THYM | rs36113933 | chr16:24838862 | A/G | 5.2E-5 | 111 | 49.4 | 27.57 | 50.1 | KM Plot |
THYM | rs367671339 | chr19:58917266 | T/C | 4.0E-5 | 109 | 38.13 | 50.1 | 31.47 | KM Plot |
THYM | rs368611404 | chr8:82787906 | AACAGT/A | 4.72E-5 | 113 | 42.73 | 36.4 | 22.5 | KM Plot |
THYM | rs375144920 | chr2:32979647 | A/G | 1.06E-12 | 112 | 49.5 | 26.2 | 0.9 | KM Plot |
THYM | rs3803716 | chr16:24802325 | C/T | 4.28E-5 | 113 | 46.6 | 30.03 | 50.1 | KM Plot |
THYM | rs4236507 | chr7:76132270 | C/A | 4.95E-5 | 111 | 39.5 | 45.87 | 31.48 | KM Plot |
THYM | rs4239498 | chr19:53943312 | A/G | 4.37E-8 | 110 | 12.98 | 37.13 | 46.27 | KM Plot |
THYM | rs4456280 | chr11:74781124 | C/T | 8.69E-6 | 113 | 50.1 | 38.48 | 43.27 | KM Plot |
THYM | rs4605479 | chr22:45797954 | G/A | 4.85E-5 | 113 | 38.33 | 50.07 | 41.77 | KM Plot |
THYM | rs4727187 | chr7:76132473 | C/A | 2.57E-5 | 112 | 38.33 | 46.23 | 25.83 | KM Plot |
THYM | rs4727191 | chr7:76139384 | C/T | 2.35E-5 | 113 | 40.67 | 45.87 | 25.83 | KM Plot |
THYM | rs4728783 | chr7:76135677 | C/T | 2.35E-5 | 113 | 39.5 | 46.23 | 25.83 | KM Plot |